Using perl Syntax Highlighting
#!usr/bin/perl
use strict;
use BeginPerlBioinfo;
open (my $fh, $ARGV[0]) or die "Error al pedir el Archivo.\n";
#Declaracion e iniciacion de variables
my $record;
my $dna;
my $annotation;
my %fields;
my $library = $fh;
while (<$fh>)
{
$record = get_next_record($fh);
#Parseo se secuencia y anotacion
($annotation, $dna) = get_annotation_and_dna($record);
#Extraer los campos
%fields = parse_annotation($annotation);
#Imprimir los campos
foreach my $key (keys %fields)
{
print "******** $key **********\n";
print $fields{$key};
}
}
#################################################################
# Subroutine
#################################################################
# parse_annotation
#
# Dar las anotaciones de GenBank, regresando un hash con
# keys: los nombres de los campos
# values: los campos
sub parse_annotation
{
my ($annotation) = @_;
my (%results) = ();
while ($annotation =~ /^REFERENCE\s+1.*\n(^\s.*\n)*/gm)
{
my $value = $&;
(my $key = $value) =~ s/^(REFERENCE\s+1+).*/$1/s;
$results{$key} = $value;
}
return %results;
}
use strict;
use BeginPerlBioinfo;
open (my $fh, $ARGV[0]) or die "Error al pedir el Archivo.\n";
#Declaracion e iniciacion de variables
my $record;
my $dna;
my $annotation;
my %fields;
my $library = $fh;
while (<$fh>)
{
$record = get_next_record($fh);
#Parseo se secuencia y anotacion
($annotation, $dna) = get_annotation_and_dna($record);
#Extraer los campos
%fields = parse_annotation($annotation);
#Imprimir los campos
foreach my $key (keys %fields)
{
print "******** $key **********\n";
print $fields{$key};
}
}
#################################################################
# Subroutine
#################################################################
# parse_annotation
#
# Dar las anotaciones de GenBank, regresando un hash con
# keys: los nombres de los campos
# values: los campos
sub parse_annotation
{
my ($annotation) = @_;
my (%results) = ();
while ($annotation =~ /^REFERENCE\s+1.*\n(^\s.*\n)*/gm)
{
my $value = $&;
(my $key = $value) =~ s/^(REFERENCE\s+1+).*/$1/s;
$results{$key} = $value;
}
return %results;
}
Coloreado en 0.003 segundos, usando GeSHi 1.0.8.4
Este es mi archivo de entrada:
- Código: Seleccionar todo
LOCUS X72459 375 bp mRNA linear PRI 14-NOV-2006
DEFINITION H.sapiens mRNA for rearranged Ig kappa light chain variable region
(I.169).
ACCESSION X72459
VERSION X72459.1 GI:441386
KEYWORDS immunoglobulin; J-segment; kappa light chain; V-region.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 375)
AUTHORS Klein,R., Jaenichen,R. and Zachau,H.G.
TITLE Expressed human immunoglobulin kappa genes and their hypermutation
JOURNAL Eur. J. Immunol. 23 (12), 3248-3262 (1993)
PUBMED 8258341
REFERENCE 2 (bases 1 to 375)
AUTHORS Zachau,H.G.
TITLE Direct Submission
JOURNAL Submitted (26-APR-1993) H.G. Zachau, Institut fuer Physiologische
Chemie, der Universitaet Muenchen, Schillerstr 44, 8000 Muenchen 2,
FRG
FEATURES Location/Qualifiers
source 1..375
/organism="Homo sapiens"
/mol_type="mRNA"
/isolate="M.L."
/db_xref="taxon:9606"
/chromosome="2"
/clone="I.169"
/tissue_type="spleen"
/clone_lib="lambda zap II phage library"
CDS 1..375
/note="Protein sequence is in conflict with the conceptual
translation"
/codon_start=1
/product="Ig kappa light chain (VJ)"
/protein_id="CAA51127.1"
/db_xref="GI:441387"
/translation="PAQLLGLLLLWLPGARCAIQLTQSPSSLSASVGDRVTITCRASQ
GISSALAWYQQKPGKAPKLLIYDASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFAT
YYCQQFNTYPLTFGGGTKVEIKR"
V_region 1..375
/product="Ig kappa light chain (VJ)"
V_segment 53..336
J_segment 337..375
/note="J-Kappa 4"
ORIGIN
1 cccgctcagc tcctggggct tctgctgctc tggctcccag gtgccagatg tgccatccag
61 ttgacccagt ctccatcctc cctgtctgca tctgtaggag acagagtcac catcacttgc
121 cgggcaagtc agggcataag cagtgcttta gcctggtatc agcagaaacc agggaaagct
181 cctaagctcc tgatctatga tgcctccagt ttggaaagtg gggtcccatc aaggttcagc
241 ggcagtggat ctgggacaga tttcactctc accatcagca gcctgcagcc tgaagatttt
301 gcaacttatt actgtcaaca gtttaatact tacccgctca ctttcggcgg agggaccaag
361 gtggagatca aacga
//
LOCUS HUMIKCCH 300 bp mRNA linear PRI 10-MAY-1996
DEFINITION Homo sapiens (clone LK38) immunoglobulin kappa chain mRNA, partial
cds.
ACCESSION L40725
VERSION L40725.1 GI:722539
KEYWORDS immunoglobulin; kappa light chain.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 300)
AUTHORS Bridges,S.L. Jr., Lee,S.K., Johnson,M.L., Lavelle,J.C.,
Fowler,P.G., Koopman,W.J. and Schroeder,H.W. Jr.
TITLE Somatic mutation and CDR3 lengths of immunoglobulin kappa light
chains expressed in patients with rheumatoid arthritis and in
normal individuals
JOURNAL J. Clin. Invest. 96 (2), 831-841 (1995)
PUBMED 7635977
FEATURES Location/Qualifiers
source 1..300
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="LK38"
/cell_type="B-lymphocyte"
/tissue_type="blood"
/dev_stage="adult"
mRNA <1..>300
CDS <1..>300
/note="putative"
/citation=[1]
/codon_start=1
/product="immunoglobulin kappa chain"
/protein_id="AAA99377.1"
/db_xref="GI:722540"
/translation="SSLSASVGDRVTITCRASQGISSALAWYQQKPGKAPKLLIYDAS
SLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNNKNLLTFGGGTKVEIK"
ORIGIN
1 tcctccctgt ctgcatctgt aggagacaga gtcaccatca cttgccgggc aagtcagggc
61 attagcagtg ctttagcctg gtatcagcag aaaccaggga aagctcctaa gctcctgatc
121 tatgatgcct ccagtttgga aagtggggtc ccatcaaggt tcagcggcag tggatctggg
181 acagatttca ctctcaccat cagcagcctg cagcctgaag attttgcaac ttattactgt
241 caacagttta ataataaaaa cctcctcact ttcggcggag ggaccaaggt ggagatcaaa
//
LOCUS AJ410908 267 bp mRNA linear PRI 23-MAY-2001
DEFINITION Homo sapiens partial mRNA for immunoglobulin kappa chain variable
region, (V1-Vk gene), from multiple myeloma: MM-6k.
ACCESSION AJ410908
VERSION AJ410908.1 GI:14268437
KEYWORDS immunoglobulin kappa chain; light chain; V1-Vk gene; variable
region.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1
AUTHORS Kosmas,C., Viniou,N.A., Stamatopoulos,K., Courtenay-Luck,N.S.,
Papadaki,T., Kollia,P., Paterakis,G., Anagnostou,D., Yataganas,X.
and Loukopoulos,D.
TITLE Analysis of the kappa light chain variable region in multiple
myeloma
JOURNAL Br. J. Haematol. 94 (2), 306-317 (1996)
PUBMED 8759891
REFERENCE 2
AUTHORS Kosmas,C., Stamatopoulos,K., Papadaki,T., Belessi,C., Yataganas,X.,
Anagnostou,D. and Loukopoulos,D.
TITLE Somatic hypermutation of immunoglobulin variable region genes:
focus on follicular lymphoma and multiple myeloma
JOURNAL Immunol. Rev. 162, 281-292 (1998)
PUBMED 9602371
REFERENCE 3 (bases 1 to 267)
AUTHORS Kosmas,C.
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2001) Kosmas C., Medicine, Athens University
School of Medicine, 21 Apolloniou Street, 16341 Athens, GREECE
FEATURES Location/Qualifiers
source 1..267
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/tissue_type="multiple myeloma: MM-6k"
/rearranged
gene <1..>267
/gene="V1-Vk"
CDS <1..>267
/gene="V1-Vk"
/experiment="experimental evidence, no additional details
recorded"
/codon_start=1
/product="immunoglobulin kappa chain variable region"
/protein_id="CAC39376.1"
/db_xref="GI:14268438"
/translation="PSSLSASVGDRVVTITCRVSQSISSFLAWYQQKPGNAPKLLIYD
AFSLLSGVPSRFSGSGSGTDFTFTISSLQPDDFATYYCQLRTSSP"
ORIGIN
1 ccatcctccc tgtctgcatc tgtaggagac agagtcgtca ccatcacttg ccgggttagt
61 cagagcatta gcagcttctt agcctggtat cagcagaaac ctgggaacgc gcctaagctc
121 ctgatctatg atgcattcag tttgttgagt ggagttccat caaggttcag tggcagtggc
181 tctggaactg atttcacttt taccatcagt agcctgcagc ctgacgactt tgccacttat
241 tattgtcagc tgcgcactag cagccca
//
LOCUS AK097353 929 bp mRNA linear PRI 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ40034 fis, clone SYNOV2000152, highly similar
to Homo sapiens kappa 1 immunoglobulin light chain mRNA.
ACCESSION AK097353
VERSION AK097353.1 GI:21757070
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S., Watanabe,S.,
Yosida,M., Hotuta,T., Kusano,J., Kanehori,K., Takahashi-Fujii,A.,
Hara,H., Tanase,T.O., Nomura,Y., Togiya,S., Komai,F., Hara,R.,
Takeuchi,K., Arita,M., Imose,N., Musashino,K., Yuuki,H., Oshima,A.,
Sasaki,N., Aotsuka,S., Yoshikawa,Y., Matsunawa,H., Ichihara,T.,
Shiohata,N., Sano,S., Moriya,S., Momiyama,H., Satoh,N., Takami,S.,
Terashima,Y., Suzuki,O., Nakagawa,S., Senoh,A., Mizoguchi,H.,
Goto,Y., Shimizu,F., Wakebe,H., Hishigaki,H., Watanabe,T.,
Sugiyama,A., Takemoto,M., Kawakami,B., Yamazaki,M., Watanabe,K.,
Kumagai,A., Itakura,S., Fukuzumi,Y., Fujimori,Y., Komiyama,M.,
Tashiro,H., Tanigami,A., Fujiwara,T., Ono,T., Yamada,K., Fujii,Y.,
Ozaki,K., Hirao,M., Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N.,
Inagaki,H., Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T.,
Noguchi,S., Itoh,T., Shigeta,K., Senba,T., Matsumura,K.,
Nakajima,Y., Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T.,
Oyama,M., Hata,H., Watanabe,M., Komatsu,T., Mizushima-Sugano,J.,
Satoh,T., Shirai,Y., Takahashi,Y., Nakagawa,K., Okumura,K.,
Nagase,T., Nomura,N., Kikuchi,H., Masuho,Y., Yamashita,R.,
Nakai,K., Yada,T., Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36 (1), 40-45 (2004)
PUBMED 14702039
REFERENCE 2
AUTHORS Ninomiya,K., Wagatsuma,M., Kanda,K., Kondo,H., Yokoi,T.,
Kodaira,H., Furuya,T., Takahashi,M., Kikkawa,E., Omura,Y., Abe,K.,
Kamihara,K., Katsuta,N., Sato,K., Tanikawa,M., Yamazaki,M.,
Sugiyama,T., Irie,R., Otsuki,T., Sato,H., Wakamatsu,A., Ishii,S.,
Yamamoto,J., Isono,Y., Kawai-Hio,Y., Saito,K., Nishikawa,T.,
Kimura,K., Yamashita,H., Matsuo,K., Nakamura,Y., Sekine,M.,
Kikuchi,H., Murakawa,K., Kanehori,K., Takahashi-Fujii,A.,
Oshima,A., Sugiyama,A., Kawakami,B., Suzuki,Y., Sugano,S.,
Nagahari,K., Masuho,Y., Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 929)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2002) Contact:Takao Isogai Helix Research
Institute, Genomics Laboratory; 1532-3 Yana, Kisarazu, Chiba
292-0812, Japan E-mail :[email protected]
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing: RAB,
HRI, and Biotechnology Center, National Institute of Technology and
Evaluation; clone selection for full insert sequencing: HRI and
RAB; annotation: HRI and RAB.
FEATURES Location/Qualifiers
source 1..929
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="SYNOV2000152"
/tissue_type="synovial membrane tissue from rheumatioid
arthritis"
/clone_lib="SYNOV2"
/note="cloning vector: pME18SFL3"
CDS 25..735
/note="unnamed protein product"
/codon_start=1
/protein_id="BAC05011.1"
/db_xref="GI:21757071"
/translation="MDMRVPAQLLGLLLLWLSGARCDTQMTQSPTSLSASVGDRVTIT
CQASHDIESFLNWYQYKPGKAPKRLIHDGSRSEKGVPRRFSGSGFGTDFSLFINNLQP
EDVATYYCQQFGSLPRTFGQGTKLQINRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN
FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEV
THQGLSSPVTKSFNRGEC"
ORIGIN
1 agtcagtccc aaccaggaca cagcatggac atgagggtcc ctgctcagct cctggggctc
61 ctgctgctct ggctctcagg tgccaggtgt gacactcaga tgacccagtc tccgacctcc
121 ctgtctgcat ctgtgggaga cagagtcacc atcacttgcc aggcgagtca cgacattgaa
181 agttttttaa actggtatca gtacaaacca ggcaaagccc ctaagcgcct catccacgat
241 ggctccagat cagaaaaagg agtcccacga agattcagtg gaagtggatt tgggacagat
301 tttagtcttt tcatcaacaa cctacaacct gaagatgttg cgacatatta ctgtcaacaa
361 tttggttctc tgcctcggac ctttggccag gggaccaagc ttcagatcaa tcgaactgtg
421 gctgcaccat ctgtcttcat cttcccgcca tctgatgagc agttgaaatc tggaactgcc
481 tctgttgtgt gcctgctgaa taacttctat cccagagagg ccaaagtaca gtggaaggtg
541 gataacgccc tccaatcggg taactcccag gagagtgtca cagagcagga cagcaaggac
601 agcacctaca gcctcagcag caccctgacg ctgagcaaag cagactacga gaaacacaaa
661 gtctacgcct gcgaagtcac ccatcagggc ctgagctcgc ccgtcacaaa gagcttcaac
721 aggggagagt gttagaggga gaagtgcccc cacctgctcc tcagttccag cctgaccccc
781 tcccatcctt tggcctctga ccctttttcc acaggggacc tacccctatt gcggtcctcc
841 agctcatctt tcacctcacc cccctcctcc tccttggctt taattatgct aatgttggag
901 gagaatgaat aaataaagtg aatctttgc
//
LOCUS DQ101035 316 bp mRNA linear PRI 07-NOV-2005
DEFINITION Homo sapiens isolate N1659K immunoglobulin kappa light chain
variable region (IGKV1-13) mRNA, partial cds.
ACCESSION DQ101035
VERSION DQ101035.1 GI:70798661
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 316)
AUTHORS Stamatopoulos,K., Belessi,C., Hadzidimitriou,A., Smilevska,T.,
Kalagiakou,E., Hatzi,K., Stavroyianni,N., Athanasiadou,A.,
Tsompanakou,A., Papadaki,T., Kokkini,G., Paterakis,G., Saloum,R.,
Laoutaris,N., Anagnostopoulos,A. and Fassas,A.
TITLE Immunoglobulin light chain repertoire in chronic lymphocytic
leukemia
JOURNAL Blood 106 (10), 3575-3583 (2005)
PUBMED 16076869
REFERENCE 2 (bases 1 to 316)
AUTHORS Stamatopoulos,K., Belessi,C., Hadzidimitriou,A., Smilevska,T.,
Kalagiakou,E., Hatzi,K., Stavroyianni,N., Athanasiadou,A.,
Tsompanakou,A., Papadaki,T., Kokkini,G., Paterakis,G., Saloum,R.,
Laoutaris,N., Anagnostopoulos,A. and Fassas,A.
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2005) Hematology Department and HCT Unit,
Papanikolaou General Hospital, Thessaloniki 57010, Greece
FEATURES Location/Qualifiers
source 1..316
/organism="Homo sapiens"
/mol_type="mRNA"
/isolate="N1659K"
/isolation_source="chronic lymphocytic leukemia patient"
/db_xref="taxon:9606"
/cell_type="mononuclear cells"
/tissue_type="peripheral blood"
gene <1..>316
/gene="IGKV1-13"
CDS <1..>316
/gene="IGKV1-13"
/codon_start=1
/product="immunoglobulin kappa light chain variable
region"
/protein_id="AAZ09041.1"
/db_xref="GI:70798662"
/translation="IQLTQSPSSLSASVGDRVTITCRASQGISSALAWYQQKPGKAPK
LLIYDASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNNYPPFGGGTKV
EIK"
ORIGIN
1 atccagttga cccagtctcc atcctccctg tctgcatctg taggagacag agtcaccatc
61 acttgccggg caagtcaggg cattagcagt gctttagcct ggtatcagca gaaaccaggg
121 aaagctccta agctcctgat ctatgatgcc tccagtttgg aaagtggggt cccatcaagg
181 ttcagcggca gtggatctgg gacagatttc actctcacca tcagcagcct gcagcctgaa
241 gattttgcaa cttattactg tcaacagttt aataattacc ctcctttcgg cggagggacc
301 aaggtggaga tcaaac
//
LOCUS DQ101103 314 bp mRNA linear PRI 07-NOV-2005
DEFINITION Homo sapiens isolate P1215K immunoglobulin kappa light chain
variable region (IGKV1-13) mRNA, partial cds.
ACCESSION DQ101103
VERSION DQ101103.1 GI:70798796
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 314)
AUTHORS Stamatopoulos,K., Belessi,C., Hadzidimitriou,A., Smilevska,T.,
Kalagiakou,E., Hatzi,K., Stavroyianni,N., Athanasiadou,A.,
Tsompanakou,A., Papadaki,T., Kokkini,G., Paterakis,G., Saloum,R.,
Laoutaris,N., Anagnostopoulos,A. and Fassas,A.
TITLE Immunoglobulin light chain repertoire in chronic lymphocytic
leukemia
JOURNAL Blood 106 (10), 3575-3583 (2005)
PUBMED 16076869
REFERENCE 2 (bases 1 to 314)
AUTHORS Stamatopoulos,K., Belessi,C., Hadzidimitriou,A., Smilevska,T.,
Kalagiakou,E., Hatzi,K., Stavroyianni,N., Athanasiadou,A.,
Tsompanakou,A., Papadaki,T., Kokkini,G., Paterakis,G., Saloum,R.,
Laoutaris,N., Anagnostopoulos,A. and Fassas,A.
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2005) Hematology Department and HCT Unit,
Papanikolaou General Hospital, Thessaloniki 57010, Greece
FEATURES Location/Qualifiers
source 1..314
/organism="Homo sapiens"
/mol_type="mRNA"
/isolate="P1215K"
/isolation_source="chronic lymphocytic leukemia patient"
/db_xref="taxon:9606"
/cell_type="mononuclear cells"
/tissue_type="peripheral blood"
gene <1..>314
/gene="IGKV1-13"
CDS <1..>314
/gene="IGKV1-13"
/codon_start=3
/product="immunoglobulin kappa light chain variable
region"
/protein_id="AAZ09108.1"
/db_xref="GI:70798797"
/translation="TQSPSSLSASVGDRVTITCRASQGISSALAWYQQKPGKAPKLLI
YDASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNNYPRWTFGQGTKVE
IK"
ORIGIN
1 tgacccagtc tccatcctcc ctgtctgcat ctgtaggaga cagagtcacc atcacttgcc
61 gggcaagtca gggcattagc agtgctttag cctggtatca gcagaaacca gggaaagctc
121 ctaagctcct gatctatgat gcctccagtt tggaaagtgg ggtcccatca aggttcagcg
181 gcagtggatc tgggacagat ttcactctca ccatcagcag cctgcagcct gaagattttg
241 caacttatta ctgtcaacag tttaataatt accctcgatg gacgttcggc caagggacca
301 aggtggagat caaa
//
y esta es mi salida:
- Código: Seleccionar todo
******** REFERENCE 1 **********
REFERENCE 1 (bases 1 to 300)
AUTHORS Bridges,S.L. Jr., Lee,S.K., Johnson,M.L., Lavelle,J.C.,
Fowler,P.G., Koopman,W.J. and Schroeder,H.W. Jr.
TITLE Somatic mutation and CDR3 lengths of immunoglobulin kappa light
chains expressed in patients with rheumatoid arthritis and in
normal individuals
JOURNAL J. Clin. Invest. 96 (2), 831-841 (1995)
PUBMED 7635977
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REFERENCE 1
AUTHORS Kosmas,C., Viniou,N.A., Stamatopoulos,K., Courtenay-Luck,N.S.,
Papadaki,T., Kollia,P., Paterakis,G., Anagnostou,D., Yataganas,X.
and Loukopoulos,D.
TITLE Analysis of the kappa light chain variable region in multiple
myeloma
JOURNAL Br. J. Haematol. 94 (2), 306-317 (1996)
PUBMED 8759891
******** REFERENCE 1 **********
REFERENCE 1
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S., Watanabe,S.,
Yosida,M., Hotuta,T., Kusano,J., Kanehori,K., Takahashi-Fujii,A.,
Hara,H., Tanase,T.O., Nomura,Y., Togiya,S., Komai,F., Hara,R.,
Takeuchi,K., Arita,M., Imose,N., Musashino,K., Yuuki,H., Oshima,A.,
Sasaki,N., Aotsuka,S., Yoshikawa,Y., Matsunawa,H., Ichihara,T.,
Shiohata,N., Sano,S., Moriya,S., Momiyama,H., Satoh,N., Takami,S.,
Terashima,Y., Suzuki,O., Nakagawa,S., Senoh,A., Mizoguchi,H.,
Goto,Y., Shimizu,F., Wakebe,H., Hishigaki,H., Watanabe,T.,
Sugiyama,A., Takemoto,M., Kawakami,B., Yamazaki,M., Watanabe,K.,
Kumagai,A., Itakura,S., Fukuzumi,Y., Fujimori,Y., Komiyama,M.,
Tashiro,H., Tanigami,A., Fujiwara,T., Ono,T., Yamada,K., Fujii,Y.,
Ozaki,K., Hirao,M., Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N.,
Inagaki,H., Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T.,
Noguchi,S., Itoh,T., Shigeta,K., Senba,T., Matsumura,K.,
Nakajima,Y., Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T.,
Oyama,M., Hata,H., Watanabe,M., Komatsu,T., Mizushima-Sugano,J.,
Satoh,T., Shirai,Y., Takahashi,Y., Nakagawa,K., Okumura,K.,
Nagase,T., Nomura,N., Kikuchi,H., Masuho,Y., Yamashita,R.,
Nakai,K., Yada,T., Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36 (1), 40-45 (2004)
PUBMED 14702039
******** REFERENCE 1 **********
REFERENCE 1 (bases 1 to 316)
AUTHORS Stamatopoulos,K., Belessi,C., Hadzidimitriou,A., Smilevska,T.,
Kalagiakou,E., Hatzi,K., Stavroyianni,N., Athanasiadou,A.,
Tsompanakou,A., Papadaki,T., Kokkini,G., Paterakis,G., Saloum,R.,
Laoutaris,N., Anagnostopoulos,A. and Fassas,A.
TITLE Immunoglobulin light chain repertoire in chronic lymphocytic
leukemia
JOURNAL Blood 106 (10), 3575-3583 (2005)
PUBMED 16076869
******** REFERENCE 1 **********
REFERENCE 1 (bases 1 to 314)
AUTHORS Stamatopoulos,K., Belessi,C., Hadzidimitriou,A., Smilevska,T.,
Kalagiakou,E., Hatzi,K., Stavroyianni,N., Athanasiadou,A.,
Tsompanakou,A., Papadaki,T., Kokkini,G., Paterakis,G., Saloum,R.,
Laoutaris,N., Anagnostopoulos,A. and Fassas,A.
TITLE Immunoglobulin light chain repertoire in chronic lymphocytic
leukemia
JOURNAL Blood 106 (10), 3575-3583 (2005)
PUBMED 16076869
Por alguna razon... y es lo que no sé... no me está imprimiendo las 6 referencias... Sólo me imprime 5... ¿Me podríais ayudar dándole una checadita a mi código...? Tal vez... por ahí esté el error... pero no lo encuentro.
De antemano, gracias.
